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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033890 through 18771 annotations produced 1 hits


Annotation Number : CG13350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033890
Gbrowse : chr2R:9867869-9870979 (-) // 100.0 //
Probeset : 1623830_at
Accessions : protein= NP_610921;, nucleotide= NM_137077;
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity
FlyMine data for FBgn0033890.
TRiP has 1 RNAi stocks for FBgn0033890 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033890 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 00 of 4 0.10Down
Head16 10 of 4 0.10Down
Eye9 03 of 4 0.07Down
Thoracicoabdominal ganglion26 10 of 4 0.20Down
Salivary gland21 50 of 4 0.17Down
Crop18 30 of 4 0.10Down
Midgut13 10 of 4 0.10Down
Tubule12 20 of 4 0.10Down
Hindgut17 10 of 4 0.10Down
Heart11 11 of 4 0.09Down
Fat body22 30 of 4 0.18Down
Ovary332 54 of 4 2.70Up
Testis36 34 of 4 0.30Down
Male accessory glands38 14 of 4 0.30Down
Virgin spermatheca14 10 of 4 0.12Down
Mated spermatheca12 10 of 4 0.10Down
Adult carcass15 50 of 4 0.10Down
Larval CNS113 134 of 4 0.91None
Larval Salivary gland94 54 of 4 0.76Down
Larval midgut6 10 of 4 0.05Down
Larval tubule17 20 of 4 0.10Down
Larval hindgut37 14 of 4 0.30Down
Larval fat body25 31 of 4 0.20Down
Larval trachea53 104 of 4 0.43Down
Larval carcass49 54 of 4 0.40Down
S2 cells (growing)115 44 of 4 0.93None
Whole fly124 74 of 4

Looking for FBgn0033890. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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