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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033891 through 18771 annotations produced 1 hits



(CG8067):

Annotation Number : CG8067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033891
Gbrowse : chr2R:9871156-9872401 (+) // 100.0 //
Probeset : 1623302_at
Accessions : protein= NP_610922;, nucleotide= NM_137078;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0033891.
Homophila reports that CG8067 is a close match (5e-77) to human gene C20orf7 (NP_001034464), a gene associated with Mitochondrial complex 1 deficiency, 252010 (3).
TRiP has 2 RNAi stocks for FBgn0033891 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033891 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 44 of 4 1.10Up
Head83 ± 34 of 4 1.10None
Eye88 ± 64 of 4 1.11None
Thoracicoabdominal ganglion109 ± 74 of 4 1.40Up
Salivary gland72 ± 113 of 4 0.91None
Crop87 ± 54 of 4 1.10None
Midgut69 ± 14 of 4 0.90Down
Tubule160 ± 34 of 4 2.00Up
Hindgut95 ± 44 of 4 1.20Up
Heart84 ± 44 of 4 1.07None
Fat body89 ± 74 of 4 1.13None
Ovary107 ± 14 of 4 1.40Up
Testis103 ± 34 of 4 1.30Up
Male accessory glands37 ± 34 of 4 0.50Down
Virgin spermatheca102 ± 44 of 4 1.29Up
Mated spermatheca84 ± 54 of 4 1.06None
Adult carcass132 ± 44 of 4 1.70Up
Larval CNS57 ± 44 of 4 0.72Down
Larval Salivary gland66 ± 14 of 4 0.83Down
Larval midgut59 ± 24 of 4 0.74Down
Larval tubule59 ± 44 of 4 0.80Down
Larval hindgut60 ± 44 of 4 0.76Down
Larval fat body75 ± 81 of 4 0.90None
Larval trachea56 ± 24 of 4 0.72Down
Larval carcass59 ± 34 of 4 0.76Down
S2 cells (growing)53 ± 04 of 4 0.68Down
Whole fly79 ± 24 of 4

Looking for FBgn0033891. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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