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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033897 through 18771 annotations produced 1 hits



Reduction in Cnn Dots 1 (Rcd1):

Annotation Number : CG8233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033897
Gbrowse : chr2R:10035767-10040624 (-) // 99.85 //
Probeset : 1637787_a_at
Accessions : protein= NP_610927; /// NP_725357; /// NP_725358;, nucleotide= NM_137083; /// NM_166031; /// NM_166032;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0033897.
BDGP gene expression has embryonic in situ data for CG8233: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain293 ± 64 of 4 1.40Up
Head119 ± 74 of 4 0.60Down
Eye150 ± 84 of 4 0.72Down
Thoracicoabdominal ganglion226 ± 44 of 4 1.10None
Salivary gland235 ± 104 of 4 1.12None
Crop184 ± 54 of 4 0.90None
Midgut118 ± 54 of 4 0.60Down
Tubule110 ± 34 of 4 0.50Down
Hindgut161 ± 44 of 4 0.80Down
Heart99 ± 44 of 4 0.47Down
Fat body98 ± 154 of 4 0.47Down
Ovary504 ± 124 of 4 2.40Up
Testis194 ± 34 of 4 0.90None
Male accessory glands211 ± 54 of 4 1.00None
Virgin spermatheca68 ± 14 of 4 0.32Down
Mated spermatheca76 ± 44 of 4 0.36Down
Adult carcass136 ± 24 of 4 0.60Down
Larval CNS387 ± 124 of 4 1.84Up
Larval Salivary gland236 ± 94 of 4 1.12None
Larval midgut76 ± 14 of 4 0.36Down
Larval tubule158 ± 24 of 4 0.80Down
Larval hindgut129 ± 24 of 4 0.61Down
Larval fat body154 ± 34 of 4 0.70Down
Larval trachea196 ± 84 of 4 0.94None
Larval carcass99 ± 94 of 4 0.47Down
S2 cells (growing)295 ± 64 of 4 1.40Up
Whole fly210 ± 144 of 4

Looking for FBgn0033897. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime