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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033900 through 18771 annotations produced 1 hits



(CG8257):

Annotation Number : CG8257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033900
Gbrowse : chr2R:10046892-10048732 (-) // 100.0 //
Probeset : 1627528_at
Accessions : protein= NP_610930;, nucleotide= NM_137086;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0033900.
BioGrid reports that CG8257 interacts with CG9986 .
VDRC has 4 RNAi stocks for FBgn0033900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 ± 04 of 4 0.70Down
Head95 ± 54 of 4 0.60Down
Eye64 ± 14 of 4 0.40Down
Thoracicoabdominal ganglion152 ± 54 of 4 0.90None
Salivary gland107 ± 64 of 4 0.66Down
Crop107 ± 24 of 4 0.70Down
Midgut106 ± 34 of 4 0.70Down
Tubule97 ± 54 of 4 0.60Down
Hindgut109 ± 24 of 4 0.70Down
Heart91 ± 34 of 4 0.56Down
Fat body145 ± 194 of 4 0.89None
Ovary83 ± 04 of 4 0.50Down
Testis1129 ± 384 of 4 7.00Up
Male accessory glands55 ± 24 of 4 0.30Down
Virgin spermatheca69 ± 34 of 4 0.43Down
Mated spermatheca76 ± 54 of 4 0.47Down
Adult carcass117 ± 24 of 4 0.70Down
Larval CNS108 ± 44 of 4 0.67Down
Larval Salivary gland131 ± 54 of 4 0.81Down
Larval midgut105 ± 54 of 4 0.65Down
Larval tubule103 ± 54 of 4 0.60Down
Larval hindgut132 ± 54 of 4 0.82Down
Larval fat body144 ± 304 of 4 0.90None
Larval trachea74 ± 24 of 4 0.46Down
Larval carcass134 ± 34 of 4 0.83Down
S2 cells (growing)106 ± 44 of 4 0.66Down
Whole fly162 ± 44 of 4

Looking for FBgn0033900. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime