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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033903 through 18771 annotations produced 1 hits



(CG8323):

Annotation Number : CG8323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033903
Gbrowse : chr2R:10052559-10054493 (+) // 100.0 //
Probeset : 1633690_at
Accessions : protein= NP_610933;, nucleotide= NM_137089;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0033903.
Homophila reports that CG8323 is a close match (4e-12) to human gene DNC;MCPHA;MUP1;SLC25A19 (NP_068380), a gene associated with Microcephaly, Amish type, 607196 (3).
VDRC has 1 RNAi stocks for FBgn0033903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 34 of 4 1.10None
Head85 ± 44 of 4 1.00None
Eye75 ± 34 of 4 0.88None
Thoracicoabdominal ganglion138 ± 24 of 4 1.60Up
Salivary gland170 ± 153 of 4 2.00Up
Crop82 ± 34 of 4 1.00None
Midgut127 ± 114 of 4 1.50Up
Tubule1450 ± 1114 of 417.00Up
Hindgut153 ± 34 of 4 1.80Up
Heart211 ± 134 of 4 2.48Up
Fat body258 ± 494 of 4 3.03Up
Ovary45 ± 34 of 4 0.50Down
Testis48 ± 54 of 4 0.60Down
Male accessory glands46 ± 10 of 4 0.50Down
Virgin spermatheca294 ± 174 of 4 3.45Up
Mated spermatheca318 ± 324 of 4 3.73Up
Adult carcass187 ± 74 of 4 2.20Up
Larval CNS38 ± 24 of 4 0.45Down
Larval Salivary gland134 ± 74 of 4 1.57Up
Larval midgut106 ± 134 of 4 1.25None
Larval tubule139 ± 174 of 4 1.60Up
Larval hindgut157 ± 174 of 4 1.84Up
Larval fat body61 ± 22 of 4 0.70None
Larval trachea68 ± 74 of 4 0.81None
Larval carcass122 ± 114 of 4 1.43Up
S2 cells (growing)113 ± 74 of 4 1.33None
Whole fly85 ± 94 of 4

Looking for FBgn0033903. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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