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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033906 through 18771 annotations produced 1 hits



(CG8331):

Annotation Number : CG8331
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033906
Gbrowse : chr2R:10057970-10060426 (+) // 100.0 //
Probeset : 1633559_at
Accessions : protein= NP_610936;, nucleotide= NM_137092;
FlyMine data for FBgn0033906.
Homophila reports that CG8331 is a close match (2e-15) to human gene C2ORF23;REEP1;SPG31 (NP_075063), a gene associated with Spastic paraplegia 31, 610250 (3).
BioGrid reports that CG8331 interacts with CG8331 .
VDRC has 3 RNAi stocks for FBgn0033906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain643 ± 364 of 4 0.50Down
Head1813 ± 204 of 4 1.50Up
Eye1877 ± 484 of 4 1.59Up
Thoracicoabdominal ganglion898 ± 154 of 4 0.80Down
Salivary gland6080 ± 2304 of 4 5.14Up
Crop2638 ± 1124 of 4 2.20Up
Midgut1478 ± 274 of 4 1.20Up
Tubule2527 ± 574 of 4 2.10Up
Hindgut1769 ± 214 of 4 1.50Up
Heart2216 ± 784 of 4 1.87Up
Fat body2762 ± 1404 of 4 2.33Up
Ovary1082 ± 204 of 4 0.90None
Testis567 ± 204 of 4 0.50Down
Male accessory glands4472 ± 654 of 4 3.80Up
Virgin spermatheca3422 ± 1374 of 4 2.89Up
Mated spermatheca3660 ± 1554 of 4 3.09Up
Adult carcass2373 ± 1104 of 4 2.00Up
Larval CNS1088 ± 494 of 4 0.92None
Larval Salivary gland5616 ± 3214 of 4 4.74Up
Larval midgut1596 ± 254 of 4 1.35Up
Larval tubule2011 ± 384 of 4 1.70Up
Larval hindgut1488 ± 294 of 4 1.26Up
Larval fat body2509 ± 2394 of 4 2.10Up
Larval trachea2240 ± 364 of 4 1.89Up
Larval carcass1934 ± 1004 of 4 1.63Up
S2 cells (growing)1431 ± 204 of 4 1.21Up
Whole fly1183 ± 674 of 4

Looking for FBgn0033906. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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