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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033913 through 18771 annotations produced 1 hits


Annotation Number : CG8468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033913
Gbrowse : chr2R:10107424-10118131 (+) // 100.0 //
Probeset : 1641018_s_at
Accessions : protein= NP_610940; /// NP_725367; /// NP_725368;, nucleotide= NM_137096; /// NM_166038; /// NM_166039;
Interpro : 0015355 // secondary active monocarboxylate transmembrane transporter activity // non-traceable author statement
FlyMine data for FBgn0033913.
BDGP gene expression has embryonic in situ data for CG8468: 16 pix of staining in 10 body parts.
Homophila reports that CG8468 is a close match (7e-15) to human gene DXS128;SLC16A2;XPCT (NP_006508), a gene associated with Allan-Herndon-Dudley syndrome, 300523 (3).
VDRC has 2 RNAi stocks for FBgn0033913 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.10Down
Head274 234 of 4 1.90Up
Eye611 614 of 4 4.13Up
Thoracicoabdominal ganglion16 13 of 4 0.10Down
Salivary gland9 40 of 4 0.06Down
Crop21 04 of 4 0.10Down
Midgut119 64 of 4 0.80None
Tubule2866 804 of 419.40Up
Hindgut200 64 of 4 1.40Up
Heart406 274 of 4 2.75Up
Fat body867 604 of 4 5.86Up
Ovary4 00 of 4 0.00Down
Testis3 10 of 4 0.00Down
Male accessory glands4 20 of 4 0.00Down
Virgin spermatheca1931 1604 of 413.04Up
Mated spermatheca1345 1374 of 4 9.08Up
Adult carcass314 114 of 4 2.10Up
Larval CNS17 44 of 4 0.12Down
Larval Salivary gland224 174 of 4 1.52Up
Larval midgut1644 1314 of 411.11Up
Larval tubule3386 724 of 422.90Up
Larval hindgut774 74 of 4 5.23Up
Larval fat body302 324 of 4 2.00Up
Larval trachea582 704 of 4 3.93Up
Larval carcass604 444 of 4 4.08Up
S2 cells (growing)562 364 of 4 3.80Up
Whole fly148 114 of 4

Looking for FBgn0033913. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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