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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033917 through 18771 annotations produced 1 hits



(CG8503):

Annotation Number : CG8503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033917
Gbrowse : chr2R:10131191-10133571 (+) // 100.0 //
Probeset : 1638400_at
Accessions : protein= NP_610944;, nucleotide= NM_137100;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred fr
FlyMine data for FBgn0033917.
BDGP gene expression has embryonic in situ data for CG8503: 13 pix of staining in 5 body parts.
VDRC has 1 RNAi stocks for FBgn0033917 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 12 of 4 0.10Down
Head22 ± 34 of 4 0.20Down
Eye26 ± 34 of 4 0.23Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.06Down
Crop410 ± 144 of 4 3.60Up
Midgut35 ± 44 of 4 0.30Down
Tubule179 ± 154 of 4 1.60Up
Hindgut183 ± 94 of 4 1.60Up
Heart211 ± 54 of 4 1.84Up
Fat body20 ± 23 of 4 0.18Down
Ovary233 ± 74 of 4 2.00Up
Testis13 ± 14 of 4 0.10Down
Male accessory glands67 ± 54 of 4 0.60Down
Virgin spermatheca17 ± 14 of 4 0.15Down
Mated spermatheca23 ± 24 of 4 0.20Down
Adult carcass57 ± 54 of 4 0.50Down
Larval CNS9 ± 12 of 4 0.09Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut34 ± 64 of 4 0.30Down
Larval tubule134 ± 104 of 4 1.20None
Larval hindgut200 ± 184 of 4 1.73Up
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea11 ± 61 of 4 0.10Down
Larval carcass369 ± 574 of 4 3.20Up
S2 cells (growing)4 ± 10 of 4 0.04Down
Whole fly115 ± 74 of 4

Looking for FBgn0033917. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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