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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033919 through 18771 annotations produced 1 hits


Annotation Number : CG8547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033919
Gbrowse : chr2R:10148708-10155419 (-) // 100.0 //
Probeset : 1640747_s_at
Accessions : protein= NP_610947; /// NP_725373;, nucleotide= NM_137103; /// NM_166044;
FlyMine data for FBgn0033919.
BDGP gene expression has embryonic in situ data for CG8547: 18 pix of staining in 8 body parts.
VDRC has 3 RNAi stocks for FBgn0033919 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 64 of 4 0.40Down
Head500 104 of 4 1.50Up
Eye362 74 of 4 1.07None
Thoracicoabdominal ganglion212 54 of 4 0.60Down
Salivary gland171 124 of 4 0.51Down
Crop1968 484 of 4 5.80Up
Midgut143 14 of 4 0.40Down
Tubule225 414 of 4 0.70Down
Hindgut844 164 of 4 2.50Up
Heart622 324 of 4 1.83Up
Fat body456 254 of 4 1.35Up
Ovary28 14 of 4 0.10Down
Testis66 24 of 4 0.20Down
Male accessory glands248 64 of 4 0.70Down
Virgin spermatheca730 304 of 4 2.15Up
Mated spermatheca927 274 of 4 2.73Up
Adult carcass1037 624 of 4 3.10Up
Larval CNS148 314 of 4 0.44Down
Larval Salivary gland768 274 of 4 2.26Up
Larval midgut126 84 of 4 0.37Down
Larval tubule51 04 of 4 0.20Down
Larval hindgut801 284 of 4 2.36Up
Larval fat body129 144 of 4 0.40Down
Larval trachea674 1054 of 4 1.99Up
Larval carcass1498 774 of 4 4.41Up
S2 cells (growing)257 34 of 4 0.76Down
Whole fly339 94 of 4

Looking for FBgn0033919. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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