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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033925 through 18771 annotations produced 1 hits



(CG8617):

Annotation Number : CG8617
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033925
Gbrowse : chr2R:10243272-10244789 (-) // 100.0 //
Probeset : 1636861_at
Accessions : protein= NP_610954;, nucleotide= NM_137110;
FlyMine data for FBgn0033925.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain341 34 of 4 3.10Up
Head116 144 of 4 1.10None
Eye78 44 of 4 0.71None
Thoracicoabdominal ganglion267 64 of 4 2.40Up
Salivary gland178 44 of 4 1.61Up
Crop86 44 of 4 0.80None
Midgut55 14 of 4 0.50Down
Tubule38 22 of 4 0.30Down
Hindgut80 34 of 4 0.70None
Heart45 44 of 4 0.41Down
Fat body71 54 of 4 0.64None
Ovary189 74 of 4 1.70Up
Testis161 104 of 4 1.50Up
Male accessory glands127 74 of 4 1.20None
Virgin spermatheca82 84 of 4 0.74None
Mated spermatheca93 84 of 4 0.85None
Adult carcass79 71 of 4 0.70None
Larval CNS202 114 of 4 1.83Up
Larval Salivary gland173 124 of 4 1.57Up
Larval midgut64 64 of 4 0.58Down
Larval tubule65 34 of 4 0.60Down
Larval hindgut53 24 of 4 0.49Down
Larval fat body103 114 of 4 0.90None
Larval trachea82 64 of 4 0.75None
Larval carcass91 24 of 4 0.82None
S2 cells (growing)139 44 of 4 1.26None
Whole fly110 144 of 4

Looking for FBgn0033925. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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