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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033926 through 18771 annotations produced 2 hits



Arc1 /// (Arc1 /// CG10102):

Annotation Number : CG10102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033926 /// FBgn0033927
Gbrowse : chr2R:10248808-10249506 (-) // 100.0 //
Probeset : 1639694_s_at
Accessions : protein= NP_610955; /// NP_663307;, nucleotide= NM_137111; /// NM_145334;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033926 /// FBgn0033927.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 94 of 4 0.50None
Head114 254 of 4 0.40Down
Eye15 22 of 4 0.06Down
Thoracicoabdominal ganglion266 514 of 4 1.00None
Salivary gland29 40 of 4 0.12Down
Crop469 994 of 4 1.80None
Midgut1884 934 of 4 7.30Up
Tubule8 10 of 4 0.00Down
Hindgut322 334 of 4 1.30None
Heart301 204 of 4 1.17None
Fat body18 71 of 4 0.07Down
Ovary98 114 of 4 0.40Down
Testis65 64 of 4 0.30Down
Male accessory glands2280 2924 of 4 8.90Up
Virgin spermatheca5 30 of 4 0.02Down
Mated spermatheca16 31 of 4 0.06Down
Adult carcass329 284 of 4 1.30None
Larval CNS129 174 of 4 0.51None
Larval Salivary gland1000 314 of 4 3.90Up
Larval midgut2075 474 of 4 8.09Up
Larval tubule503 494 of 4 2.00Up
Larval hindgut1021 634 of 4 3.98Up
Larval fat body133 204 of 4 0.50None
Larval trachea368 464 of 4 1.43None
Larval carcass970 1124 of 4 3.78Up
S2 cells (growing)1143 274 of 4 4.45Up
Whole fly256 464 of 4



Arc1 (Arc1):

Annotation Number : CG12505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033926
Gbrowse : chrUextra:893796-895060 (+) // 53.25 // /// chr2R:10245431-10247799 (-) // 99.83 // /// chr2R:10247937-10249272 (-) // 56.24 //
Probeset : 1639180_at
Accessions : protein= NP_610955;, nucleotide= NM_137111;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033926.
BioGrid reports that CG12505 interacts with CG1259 Dmel CG34382 .
TRiP has 1 RNAi stocks for FBgn0033926 available for purchase.
VDRC has 5 RNAi stocks for FBgn0033926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain512 474 of 4 0.50Down
Head669 374 of 4 0.60Down
Eye136 74 of 4 0.12Down
Thoracicoabdominal ganglion1426 434 of 4 1.30Up
Salivary gland185 164 of 4 0.17Down
Crop1674 1194 of 4 1.50Up
Midgut4680 1074 of 4 4.20Up
Tubule90 73 of 4 0.10Down
Hindgut1358 714 of 4 1.20Up
Heart1940 2244 of 4 1.76Up
Fat body136 464 of 4 0.12Down
Ovary476 194 of 4 0.40Down
Testis267 184 of 4 0.20Down
Male accessory glands7016 4084 of 4 6.40Up
Virgin spermatheca1138 5104 of 4 1.03None
Mated spermatheca782 1404 of 4 0.71None
Adult carcass1154 504 of 4 1.00None
Larval CNS830 934 of 4 0.75Down
Larval Salivary gland5732 3444 of 4 5.20Up
Larval midgut6265 2134 of 4 5.68Up
Larval tubule1676 1374 of 4 1.50Up
Larval hindgut3934 1264 of 4 3.57Up
Larval fat body413 444 of 4 0.40Down
Larval trachea3444 1464 of 4 3.12Up
Larval carcass4403 4464 of 4 3.99Up
S2 cells (growing)2301 334 of 4 2.09Up
Whole fly1103 314 of 4

Looking for FBgn0033926. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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