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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033929 through 18771 annotations produced 1 hits



Tfb1 (Tfb1):

Annotation Number : CG8151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033929
Gbrowse : chr2R:10250555-10252978 (+) // 100.0 //
Probeset : 1638499_s_at
Accessions : protein= NP_610957; /// NP_725382; /// NP_725383;, nucleotide= NM_137113; /// NM_166048; /// NM_166049;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005675 // holo TFIIH complex // inferred from sequence or
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016251 // general RNA polymerase II transcription
FlyMine data for FBgn0033929.
BioGrid reports that CG8151 interacts with CG8609 .
VDRC has 2 RNAi stocks for FBgn0033929 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 14 of 4 0.60Down
Head61 34 of 4 0.50Down
Eye69 14 of 4 0.55Down
Thoracicoabdominal ganglion78 24 of 4 0.60Down
Salivary gland144 114 of 4 1.14None
Crop120 64 of 4 1.00None
Midgut58 14 of 4 0.50Down
Tubule96 14 of 4 0.80Down
Hindgut85 64 of 4 0.70Down
Heart66 44 of 4 0.52Down
Fat body67 104 of 4 0.53Down
Ovary203 24 of 4 1.60Up
Testis181 14 of 4 1.40Up
Male accessory glands168 64 of 4 1.30Up
Virgin spermatheca67 14 of 4 0.53Down
Mated spermatheca61 24 of 4 0.49Down
Adult carcass64 34 of 4 0.50Down
Larval CNS232 154 of 4 1.84Up
Larval Salivary gland130 64 of 4 1.02None
Larval midgut76 04 of 4 0.60Down
Larval tubule121 34 of 4 1.00None
Larval hindgut146 64 of 4 1.16Up
Larval fat body94 64 of 4 0.70Down
Larval trachea209 174 of 4 1.66Up
Larval carcass147 124 of 4 1.17None
S2 cells (growing)392 74 of 4 3.09Up
Whole fly126 24 of 4

Looking for FBgn0033929. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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