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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033933 through 18771 annotations produced 1 hits


Annotation Number : CG10104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033933
Gbrowse : chr2R:10278290-10279831 (+) // 100.0 //
Probeset : 1639073_at
Accessions : protein= NP_610961;, nucleotide= NM_137117;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0033933.
BDGP gene expression has embryonic in situ data for CG10104: 4 pix of staining in 1 body parts.
Homophila reports that CG10104 is a close match (5e-84) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
BioGrid reports that CG10104 interacts with CG9511 .
VDRC has 2 RNAi stocks for FBgn0033933 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head2 00 of 4 0.40Down
Eye1 00 of 4 0.14Down
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland9 30 of 4 1.20None
Crop3 10 of 4 0.40Down
Midgut3 00 of 4 0.40Down
Tubule2 00 of 4 0.30Down
Hindgut1 00 of 4 0.20Down
Heart0 00 of 4 0.13Down
Fat body2 30 of 4 0.35Down
Ovary0 00 of 4 0.10Down
Testis94 64 of 412.60Up
Male accessory glands0 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.15Down
Mated spermatheca1 00 of 4 0.19Down
Adult carcass3 20 of 4 0.40None
Larval CNS3 20 of 4 0.46None
Larval Salivary gland4 10 of 4 0.62None
Larval midgut4 00 of 4 0.56Down
Larval tubule2 00 of 4 0.30Down
Larval hindgut2 00 of 4 0.27Down
Larval fat body14 61 of 4 2.00None
Larval trachea1 10 of 4 0.16Down
Larval carcass0 00 of 4 0.07Down
S2 cells (growing)3 00 of 4 0.41Down
Whole fly7 00 of 4

Looking for FBgn0033933. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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