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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033935 through 18771 annotations produced 1 hits

CG10105 (Sin1):

Annotation Number : CG10105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033935
Gbrowse : chr2R:10299339-10301365 (+) // 100.0 //
Probeset : 1635018_at
Accessions : protein= NP_610963;, nucleotide= NM_137119;
Pathway : 0005829 // cytosol // inferred by curator
FlyMine data for FBgn0033935.
BDGP gene expression has embryonic in situ data for CG10105: 4 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0033935 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033935 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 24 of 4 1.30Up
Head33 24 of 4 0.60Down
Eye44 24 of 4 0.81Down
Thoracicoabdominal ganglion54 24 of 4 1.00None
Salivary gland43 44 of 4 0.79None
Crop53 24 of 4 1.00None
Midgut26 14 of 4 0.50Down
Tubule25 14 of 4 0.50Down
Hindgut34 24 of 4 0.60Down
Heart23 14 of 4 0.43Down
Fat body26 34 of 4 0.48Down
Ovary126 14 of 4 2.30Up
Testis17 24 of 4 0.30Down
Male accessory glands29 34 of 4 0.50Down
Virgin spermatheca13 34 of 4 0.25Down
Mated spermatheca16 24 of 4 0.29Down
Adult carcass31 24 of 4 0.60Down
Larval CNS63 44 of 4 1.16None
Larval Salivary gland55 14 of 4 1.01None
Larval midgut33 24 of 4 0.60Down
Larval tubule37 14 of 4 0.70Down
Larval hindgut34 34 of 4 0.62Down
Larval fat body36 64 of 4 0.70Down
Larval trachea32 54 of 4 0.59Down
Larval carcass41 24 of 4 0.76Down
S2 cells (growing)47 14 of 4 0.86None
Whole fly55 34 of 4

Looking for FBgn0033935. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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