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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033942 through 18771 annotations produced 1 hits



CG10112 (Cpr51A):

Annotation Number : CG10112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033942
Gbrowse : chr2R:10400046-10402713 (-) // 100.0 //
Probeset : 1638869_at
Accessions : protein= NP_610968;, nucleotide= NM_137124;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0033942.
BDGP gene expression has embryonic in situ data for CG10112: 35 pix of staining in 7 body parts.
BioGrid reports that CG10112 interacts with CG11984 CG14089 .
VDRC has 2 RNAi stocks for FBgn0033942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.20Down
Head40 ± 54 of 4 0.80None
Eye20 ± 53 of 4 0.39Down
Thoracicoabdominal ganglion9 ± 21 of 4 0.20Down
Salivary gland23 ± 12 of 4 0.45Down
Crop2214 ± 1524 of 442.20Up
Midgut50 ± 34 of 4 1.00None
Tubule9 ± 01 of 4 0.20Down
Hindgut108 ± 104 of 4 2.10Up
Heart11 ± 03 of 4 0.22Down
Fat body15 ± 32 of 4 0.30Down
Ovary2 ± 00 of 4 0.10Down
Testis168 ± 74 of 4 3.20Up
Male accessory glands12 ± 31 of 4 0.20Down
Virgin spermatheca29 ± 14 of 4 0.57Down
Mated spermatheca44 ± 84 of 4 0.85None
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS44 ± 134 of 4 0.85None
Larval Salivary gland70 ± 134 of 4 1.34None
Larval midgut24 ± 04 of 4 0.46Down
Larval tubule8 ± 20 of 4 0.20Down
Larval hindgut214 ± 254 of 4 4.08Up
Larval fat body11 ± 51 of 4 0.20Down
Larval trachea1855 ± 4514 of 435.38Up
Larval carcass253 ± 614 of 4 4.84Up
S2 cells (growing)10 ± 04 of 4 0.19Down
Whole fly52 ± 24 of 4

Looking for FBgn0033942. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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