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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033943 through 18771 annotations produced 1 hits



(CG12869):

Annotation Number : CG12869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033943
Gbrowse : chr2R:10478707-10483126 (+) // 100.0 //
Probeset : 1629232_at
Accessions : protein= NP_610969;, nucleotide= NM_137125;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0033943.
BDGP gene expression has embryonic in situ data for CG12869: 19 pix of staining in 8 body parts.
Homophila reports that CG12869 is a close match (1e-12) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 3 RNAi stocks for FBgn0033943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 1.00None
Head7 ± 12 of 4 1.00None
Eye4 ± 11 of 4 0.52None
Thoracicoabdominal ganglion12 ± 14 of 4 1.70Up
Salivary gland7 ± 20 of 4 0.92None
Crop9 ± 13 of 4 1.20None
Midgut1 ± 00 of 4 0.20Down
Tubule4 ± 11 of 4 0.60Down
Hindgut3 ± 00 of 4 0.40Down
Heart3 ± 11 of 4 0.47None
Fat body3 ± 20 of 4 0.48Down
Ovary2 ± 11 of 4 0.30Down
Testis11 ± 04 of 4 1.50Up
Male accessory glands6 ± 21 of 4 0.90None
Virgin spermatheca4 ± 11 of 4 0.58None
Mated spermatheca4 ± 12 of 4 0.54None
Adult carcass9 ± 21 of 4 1.30None
Larval CNS15 ± 44 of 4 2.08Up
Larval Salivary gland6 ± 10 of 4 0.78None
Larval midgut2 ± 00 of 4 0.33Down
Larval tubule3 ± 00 of 4 0.50Down
Larval hindgut5 ± 02 of 4 0.76None
Larval fat body6 ± 21 of 4 0.90None
Larval trachea1 ± 10 of 4 0.25Down
Larval carcass15 ± 04 of 4 1.97Up
S2 cells (growing)4 ± 12 of 4 0.52None
Whole fly7 ± 14 of 4

Looking for FBgn0033943. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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