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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033945 through 18771 annotations produced 1 hits



(CG12868):

Annotation Number : CG12868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033945
Gbrowse : chr2R:10492140-10492632 (-) // 100.0 //
Probeset : 1635030_at
Accessions : protein= NP_610971;, nucleotide= NM_137127;
FlyMine data for FBgn0033945.
BioGrid reports that CG12868 interacts with CG15561 .
VDRC has 2 RNAi stocks for FBgn0033945 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 ± 34 of 4 1.40Up
Head129 ± 84 of 4 1.50Up
Eye150 ± 44 of 4 1.78Up
Thoracicoabdominal ganglion150 ± 44 of 4 1.80Up
Salivary gland75 ± 94 of 4 0.89None
Crop159 ± 94 of 4 1.90Up
Midgut310 ± 164 of 4 3.70Up
Tubule136 ± 124 of 4 1.60Up
Hindgut140 ± 24 of 4 1.70Up
Heart167 ± 64 of 4 1.98Up
Fat body79 ± 74 of 4 0.94None
Ovary100 ± 34 of 4 1.20None
Testis69 ± 34 of 4 0.80None
Male accessory glands80 ± 54 of 4 1.00None
Virgin spermatheca75 ± 84 of 4 0.90None
Mated spermatheca83 ± 94 of 4 0.98None
Adult carcass112 ± 64 of 4 1.30Up
Larval CNS78 ± 114 of 4 0.93None
Larval Salivary gland87 ± 34 of 4 1.04None
Larval midgut448 ± 194 of 4 5.30Up
Larval tubule430 ± 424 of 4 5.10Up
Larval hindgut211 ± 194 of 4 2.50Up
Larval fat body287 ± 514 of 4 3.40Up
Larval trachea127 ± 174 of 4 1.51Up
Larval carcass69 ± 54 of 4 0.83None
S2 cells (growing)102 ± 64 of 4 1.22None
Whole fly84 ± 54 of 4

Looking for FBgn0033945. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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