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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033948 through 18771 annotations produced 1 hits



(CG12863):

Annotation Number : CG12863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033948
Gbrowse : chr2R:10507299-10508817 (-) // 100.0 //
Probeset : 1635428_at
Accessions : protein= NP_610973;, nucleotide= NM_137129;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // infe
FlyMine data for FBgn0033948.
BDGP gene expression has embryonic in situ data for CG12863: 4 pix of staining in 1 body parts.
BioGrid reports that CG12863 interacts with CG7605 CG7885 CG8942 CG41099 CG32369 .
VDRC has 1 RNAi stocks for FBgn0033948 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 34 of 4 0.60Down
Head49 44 of 4 0.60Down
Eye59 44 of 4 0.67Down
Thoracicoabdominal ganglion56 44 of 4 0.60Down
Salivary gland94 114 of 4 1.07None
Crop73 54 of 4 0.80None
Midgut52 14 of 4 0.60Down
Tubule91 24 of 4 1.00None
Hindgut49 14 of 4 0.60Down
Heart68 14 of 4 0.77None
Fat body75 44 of 4 0.84None
Ovary204 14 of 4 2.30Up
Testis41 24 of 4 0.50Down
Male accessory glands124 74 of 4 1.40Up
Virgin spermatheca95 44 of 4 1.08None
Mated spermatheca115 84 of 4 1.29None
Adult carcass54 14 of 4 0.60Down
Larval CNS116 74 of 4 1.31Up
Larval Salivary gland90 74 of 4 1.01None
Larval midgut44 33 of 4 0.50Down
Larval tubule79 24 of 4 0.90None
Larval hindgut65 14 of 4 0.74None
Larval fat body88 44 of 4 1.00None
Larval trachea115 184 of 4 1.30None
Larval carcass53 64 of 4 0.60Down
S2 cells (growing)96 14 of 4 1.08None
Whole fly89 84 of 4

Looking for FBgn0033948. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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