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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033949 through 18771 annotations produced 1 hits



(CG10131):

Annotation Number : CG10131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033949
Gbrowse : chr2R:10517417-10518526 (+) // 100.0 //
Probeset : 1623555_at
Accessions : protein= NP_610974;, nucleotide= NM_137130;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase acti
FlyMine data for FBgn0033949.
Homophila reports that CG10131 is a close match (6e-20) to human gene HADHSC;SCHAD;HHF4 (NP_005318), a gene associated with 3-hydroxyacyl-CoA dehydrogenase deficiency, 231530 (3);Hyperinsulinemic hypoglycemia, familial, 4, 609975 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 44 of 4 1.20None
Head173 104 of 4 4.70Up
Eye33 24 of 4 0.90None
Thoracicoabdominal ganglion29 44 of 4 0.80None
Salivary gland2 00 of 4 0.06Down
Crop3 10 of 4 0.10Down
Midgut7 30 of 4 0.20Down
Tubule7 20 of 4 0.20Down
Hindgut1 00 of 4 0.00Down
Heart788 284 of 421.31Up
Fat body28 84 of 4 0.77None
Ovary1 00 of 4 0.10Down
Testis11 00 of 4 0.30Down
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca9 21 of 4 0.26Down
Mated spermatheca10 21 of 4 0.27Down
Adult carcass174 114 of 4 4.70Up
Larval CNS4 10 of 4 0.12Down
Larval Salivary gland18 22 of 4 0.51Down
Larval midgut18 21 of 4 0.49Down
Larval tubule70 124 of 4 1.90None
Larval hindgut27 54 of 4 0.74None
Larval fat body146 294 of 4 4.00Up
Larval trachea80 274 of 4 2.17Up
Larval carcass311 284 of 4 8.43Up
S2 cells (growing)221 164 of 4 5.99Up
Whole fly37 44 of 4

Looking for FBgn0033949. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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