FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033950 through 18771 annotations produced 3 hits

(CG12862):

Annotation Number : CG12862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033950
Gbrowse : chr2R:10527718-10528131 (-) // 100.0 //
Probeset : 1632511_at
Accessions : protein= NP_610975; /// NP_725404;, nucleotide= NM_137131; /// NM_166061;
FlyMine data for FBgn0033950.
BioGrid reports that CG12862 interacts with CG6608 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 2	0 of 4	0.40	None
Head	9 ± 2	0 of 4	1.20	None
Eye	1 ± 0	0 of 4	0.20	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.60	None
Salivary gland	9 ± 3	0 of 4	1.20	None
Crop	5 ± 0	0 of 4	0.60	None
Midgut	3 ± 0	0 of 4	0.50	None
Tubule	6 ± 1	0 of 4	0.90	None
Hindgut	5 ± 1	0 of 4	0.70	None
Heart	4 ± 2	0 of 4	0.58	None
Fat body	7 ± 2	0 of 4	0.92	None
Ovary	2 ± 0	0 of 4	0.30	None
Testis	2 ± 1	0 of 4	0.40	None
Male accessory glands	10 ± 2	0 of 4	1.40	None
Virgin spermatheca	6 ± 3	0 of 4	0.84	None
Mated spermatheca	4 ± 1	0 of 4	0.56	None
Adult carcass	7 ± 2	0 of 4	0.90	None
Larval CNS	4 ± 2	0 of 4	0.60	None
Larval Salivary gland	7 ± 2	0 of 4	0.91	None
Larval midgut	6 ± 1	0 of 4	0.80	None
Larval tubule	12 ± 2	0 of 4	1.60	None
Larval hindgut	4 ± 2	0 of 4	0.51	None
Larval fat body	7 ± 3	0 of 4	0.90	None
Larval trachea	1 ± 0	0 of 4	0.18	None
Larval carcass	8 ± 2	0 of 4	1.06	None
S2 cells (growing)	4 ± 1	0 of 4	0.53	None
Whole fly	7 ± 3	0 of 4

(CG12862):

Annotation Number : CG12862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033950
Gbrowse : chr2R:10527881-10528396 (-) // 100.0 //
Probeset : 1623622_a_at
Accessions : protein= NP_610975; /// NP_725404;, nucleotide= NM_137131; /// NM_166061;
FlyMine data for FBgn0033950.
BioGrid reports that CG12862 interacts with CG6608 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	1.00	None
Head	2 ± 0	0 of 4	0.70	None
Eye	3 ± 1	0 of 4	1.03	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.70	None
Salivary gland	17 ± 4	1 of 4	4.66	None
Crop	1 ± 0	0 of 4	0.50	None
Midgut	3 ± 2	0 of 4	0.90	None
Tubule	4 ± 0	0 of 4	1.20	None
Hindgut	4 ± 1	0 of 4	1.30	None
Heart	2 ± 0	0 of 4	0.60	None
Fat body	1 ± 0	0 of 4	0.46	None
Ovary	2 ± 0	0 of 4	0.50	None
Testis	2 ± 0	0 of 4	0.60	None
Male accessory glands	8 ± 2	0 of 4	2.30	None
Virgin spermatheca	2 ± 1	0 of 4	0.58	None
Mated spermatheca	6 ± 2	0 of 4	1.66	None
Adult carcass	7 ± 1	0 of 4	2.00	None
Larval CNS	1 ± 1	0 of 4	0.49	None
Larval Salivary gland	10 ± 2	0 of 4	2.95	None
Larval midgut	1 ± 0	0 of 4	0.40	None
Larval tubule	3 ± 1	0 of 4	1.00	None
Larval hindgut	5 ± 1	0 of 4	1.42	None
Larval fat body	6 ± 1	0 of 4	1.80	None
Larval trachea	3 ± 2	0 of 4	0.96	None
Larval carcass	3 ± 1	0 of 4	0.88	None
S2 cells (growing)	1 ± 0	0 of 4	0.45	None
Whole fly	3 ± 1	0 of 4

(CG12862):

Annotation Number : CG12862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033950
Gbrowse : chr2R:10527881-10528396 (-) // 100.0 //
Probeset : 1640996_at
Accessions : protein= NP_610975; /// NP_725404;, nucleotide= NM_137131; /// NM_166061;
FlyMine data for FBgn0033950.
BioGrid reports that CG12862 interacts with CG6608 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.50	None
Head	0 ± 0	0 of 4	0.30	None
Eye	1 ± 0	0 of 4	0.78	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.30	None
Salivary gland	6 ± 1	0 of 4	3.59	None
Crop	0 ± 0	0 of 4	0.20	None
Midgut	1 ± 0	0 of 4	1.00	None
Tubule	1 ± 0	0 of 4	0.90	None
Hindgut	3 ± 1	0 of 4	1.90	None
Heart	2 ± 1	0 of 4	1.29	None
Fat body	1 ± 1	0 of 4	0.79	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	2 ± 1	0 of 4	1.50	None
Virgin spermatheca	2 ± 0	0 of 4	1.15	None
Mated spermatheca	4 ± 0	0 of 4	2.47	None
Adult carcass	4 ± 2	0 of 4	2.20	None
Larval CNS	1 ± 0	0 of 4	0.86	None
Larval Salivary gland	1 ± 0	0 of 4	0.70	None
Larval midgut	5 ± 0	0 of 4	2.96	Up
Larval tubule	2 ± 1	0 of 4	1.50	None
Larval hindgut	0 ± 0	0 of 4	0.32	None
Larval fat body	0 ± 0	0 of 4	0.40	None
Larval trachea	1 ± 1	0 of 4	0.78	None
Larval carcass	2 ± 0	0 of 4	1.19	None
S2 cells (growing)	1 ± 0	0 of 4	0.85	None
Whole fly	1 ± 1	0 of 4

Looking for FBgn0033950. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720