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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033954 through 18771 annotations produced 1 hits



(CG12860):

Annotation Number : CG12860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033954
Gbrowse : chr2R:10553125-10554322 (-) // 100.0 //
Probeset : 1639634_at
Accessions : protein= NP_610979;, nucleotide= NM_137135;
FlyMine data for FBgn0033954.
BDGP gene expression has embryonic in situ data for CG12860: 4 pix of staining in 1 body parts.
BioGrid reports that CG12860 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0033954 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 31 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.02Down
Crop8 ± 20 of 4 0.00Down
Midgut7 ± 20 of 4 0.00Down
Tubule8 ± 10 of 4 0.00Down
Hindgut6 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.01Down
Fat body9 ± 20 of 4 0.01Down
Ovary2 ± 00 of 4 0.00Down
Testis3521 ± 1064 of 4 5.40Up
Male accessory glands18 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 00 of 4 0.01Down
Mated spermatheca17 ± 42 of 4 0.03Down
Adult carcass32 ± 91 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.01Down
Larval Salivary gland9 ± 30 of 4 0.01Down
Larval midgut14 ± 20 of 4 0.02Down
Larval tubule7 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body358 ± 2114 of 4 0.50None
Larval trachea25 ± 361 of 4 0.04Down
Larval carcass9 ± 00 of 4 0.01Down
S2 cells (growing)5 ± 00 of 4 0.01Down
Whole fly652 ± 134 of 4

Looking for FBgn0033954. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime