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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033955 through 18771 annotations produced 1 hits


Annotation Number : CG12866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033955
Gbrowse : chr2R:10555920-10558843 (+) // 100.0 //
Probeset : 1633433_at
Accessions : protein= NP_001163151; /// NP_610980;, nucleotide= NM_001169680; /// NM_137136;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033955.
Homophila reports that CG12866 is a close match (1e-11) to human gene DXS128;SLC16A2;XPCT (NP_006508), a gene associated with Allan-Herndon-Dudley syndrome, 300523 (3).
VDRC has 3 RNAi stocks for FBgn0033955 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head4 11 of 4 0.30Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland10 00 of 4 0.73Down
Crop5 20 of 4 0.40Down
Midgut14 34 of 4 1.00None
Tubule5 00 of 4 0.40Down
Hindgut6 00 of 4 0.50Down
Heart1 10 of 4 0.12Down
Fat body5 10 of 4 0.39Down
Ovary2 00 of 4 0.20Down
Testis145 44 of 410.50Up
Male accessory glands8 20 of 4 0.60None
Virgin spermatheca1 00 of 4 0.12Down
Mated spermatheca2 10 of 4 0.20Down
Adult carcass10 20 of 4 0.70None
Larval CNS2 10 of 4 0.18Down
Larval Salivary gland4 10 of 4 0.31Down
Larval midgut16 12 of 4 1.15None
Larval tubule6 20 of 4 0.50Down
Larval hindgut5 00 of 4 0.40Down
Larval fat body32 123 of 4 2.30None
Larval trachea3 10 of 4 0.23Down
Larval carcass4 10 of 4 0.32Down
S2 cells (growing)3 00 of 4 0.26Down
Whole fly13 04 of 4

Looking for FBgn0033955. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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