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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033958 through 18771 annotations produced 1 hits


(CG12858):

Annotation Number : CG12858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033958
Gbrowse : chr2R:10627870-10632834 (-) // 100.0 //
Probeset : 1635705_at
Accessions : protein= NP_610983;, nucleotide= NM_137139;
FlyMine data for FBgn0033958.
BDGP gene expression has embryonic in situ data for CG12858: 11 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0033958 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain435 ± 224 of 421.20Up
Head148 ± 244 of 4 7.20Up
Eye84 ± 64 of 4 4.12Up
Thoracicoabdominal ganglion339 ± 294 of 416.50Up
Salivary gland3 ± 00 of 4 0.19Down
Crop4 ± 20 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.13Down
Fat body5 ± 10 of 4 0.27Down
Ovary1 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 11 of 4 0.17Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass11 ± 30 of 4 0.60None
Larval CNS90 ± 154 of 4 4.40Up
Larval Salivary gland5 ± 20 of 4 0.28Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.19Down
Larval fat body7 ± 30 of 4 0.40Down
Larval trachea3 ± 42 of 4 0.19Down
Larval carcass4 ± 10 of 4 0.22Down
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly20 ± 04 of 4

Looking for FBgn0033958. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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