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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033960 through 18771 annotations produced 1 hits


Annotation Number : CG10151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033960
Gbrowse : chr2R:10640841-10643793 (-) // 100.0 //
Probeset : 1630624_s_at
Accessions : protein= NP_001137670; /// NP_610984; /// NP_725414; /// NP_725415;, nucleotide= NM_001144198; /// NM_137140; /// NM_166067; /// NM_166068;
FlyMine data for FBgn0033960.
BDGP gene expression has embryonic in situ data for CG10151: 11 pix of staining in 3 body parts.
BioGrid reports that CG10151 interacts with CG4270 .
TRiP has 1 RNAi stocks for FBgn0033960 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033960 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 64 of 415.30Up
Head51 44 of 4 4.00Up
Eye69 44 of 4 5.48Up
Thoracicoabdominal ganglion134 34 of 410.60Up
Salivary gland7 50 of 4 0.57None
Crop2 00 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.20Down
Heart2 00 of 4 0.16Down
Fat body2 10 of 4 0.19Down
Ovary7 13 of 4 0.60Down
Testis108 24 of 4 8.60Up
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca0 00 of 4 0.07Down
Mated spermatheca1 00 of 4 0.10Down
Adult carcass6 20 of 4 0.50None
Larval CNS316 314 of 425.04Up
Larval Salivary gland0 00 of 4 0.05Down
Larval midgut2 00 of 4 0.20Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.05Down
Larval fat body28 63 of 4 2.30None
Larval trachea2 20 of 4 0.18Down
Larval carcass3 00 of 4 0.29Down
S2 cells (growing)11 03 of 4 0.91None
Whole fly12 04 of 4

Looking for FBgn0033960. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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