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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033961 through 18771 annotations produced 1 hits



anon-fast-evolving-3B12 (CG12859):

Annotation Number : CG12859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033961
Gbrowse : chr2R:10644025-10644578 (+) // 100.0 //
Probeset : 1630156_at
Accessions : protein= NP_610985;, nucleotide= NM_137141;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0033961.
VDRC has 2 RNAi stocks for FBgn0033961 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain630 ± 194 of 4 1.00None
Head804 ± 234 of 4 1.30Up
Eye955 ± 134 of 4 1.55Up
Thoracicoabdominal ganglion997 ± 394 of 4 1.60Up
Salivary gland817 ± 474 of 4 1.33Up
Crop581 ± 334 of 4 0.90None
Midgut693 ± 144 of 4 1.10None
Tubule524 ± 234 of 4 0.90Down
Hindgut1030 ± 194 of 4 1.70Up
Heart826 ± 304 of 4 1.34Up
Fat body862 ± 804 of 4 1.40Up
Ovary341 ± 74 of 4 0.60Down
Testis313 ± 34 of 4 0.50Down
Male accessory glands608 ± 364 of 4 1.00None
Virgin spermatheca1081 ± 594 of 4 1.76Up
Mated spermatheca953 ± 334 of 4 1.55Up
Adult carcass1543 ± 914 of 4 2.50Up
Larval CNS469 ± 404 of 4 0.76Down
Larval Salivary gland854 ± 694 of 4 1.39Up
Larval midgut604 ± 304 of 4 0.98None
Larval tubule472 ± 284 of 4 0.80Down
Larval hindgut706 ± 234 of 4 1.15None
Larval fat body348 ± 214 of 4 0.60Down
Larval trachea394 ± 284 of 4 0.64Down
Larval carcass626 ± 664 of 4 1.02None
S2 cells (growing)186 ± 24 of 4 0.30Down
Whole fly615 ± 314 of 4

Looking for FBgn0033961. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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