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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033969 through 18771 annotations produced 1 hits



(CG10202):

Annotation Number : CG10202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033969
Gbrowse : chr2R:10705364-10707492 (-) // 100.0 //
Probeset : 1624757_at
Accessions : protein= NP_610992;, nucleotide= NM_137148;
Interpro : "0004615 // phosphomannomutase activity // inferred from sequence or structural similarity /// 0004615 // phosphomannomu
FlyMine data for FBgn0033969.
BDGP gene expression has embryonic in situ data for CG10202: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0033969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye3 10 of 4 0.05Down
Thoracicoabdominal ganglion6 11 of 4 0.10Down
Salivary gland21 72 of 4 0.31Down
Crop3 10 of 4 0.00Down
Midgut8 11 of 4 0.10Down
Tubule5 01 of 4 0.10Down
Hindgut4 11 of 4 0.10Down
Heart2 00 of 4 0.04Down
Fat body7 10 of 4 0.11Down
Ovary3 01 of 4 0.00Down
Testis825 204 of 412.00Up
Male accessory glands4 20 of 4 0.10Down
Virgin spermatheca3 00 of 4 0.05Down
Mated spermatheca6 10 of 4 0.09Down
Adult carcass6 10 of 4 0.10Down
Larval CNS3 11 of 4 0.06Down
Larval Salivary gland5 20 of 4 0.08Down
Larval midgut6 20 of 4 0.09Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut2 11 of 4 0.03Down
Larval fat body56 283 of 4 0.80None
Larval trachea2 41 of 4 0.04Down
Larval carcass2 10 of 4 0.04Down
S2 cells (growing)3 00 of 4 0.04Down
Whole fly69 34 of 4

Looking for FBgn0033969. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime