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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033970 through 18771 annotations produced 2 hits



(CG10205):

Annotation Number : CG10205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033970
Gbrowse : chr2R:10720337-10721460 (+) // 100.0 //
Probeset : 1635272_a_at
Accessions : protein= NP_610993; /// NP_725422;, nucleotide= NM_137149; /// NM_166072;
FlyMine data for FBgn0033970.
BDGP gene expression has embryonic in situ data for CG10205: 4 pix of staining in 1 body parts.
BioGrid reports that CG10205 interacts with CG17019 CG6357 .
TRiP has 1 RNAi stocks for FBgn0033970 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head376 ± 394 of 4 8.50Up
Eye11 ± 21 of 4 0.25Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland12 ± 40 of 4 0.28Down
Crop4 ± 20 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body4 ± 40 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass194 ± 34 of 4 4.40Up
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut2 ± 10 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea122 ± 154 of 4 2.78Up
Larval carcass16 ± 43 of 4 0.38Down
S2 cells (growing)8 ± 11 of 4 0.19Down
Whole fly44 ± 14 of 4



(CG10205):

Annotation Number : CG10205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033970
Gbrowse : chr2R:10720337-10721460 (+) // 100.0 //
Probeset : 1630084_at
Accessions : protein= NP_610993; /// NP_725422;, nucleotide= NM_137149; /// NM_166072;
FlyMine data for FBgn0033970.
BDGP gene expression has embryonic in situ data for CG10205: 4 pix of staining in 1 body parts.
BioGrid reports that CG10205 interacts with CG17019 CG6357 .
TRiP has 1 RNAi stocks for FBgn0033970 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head164 ± 94 of 4 8.00Up
Eye1 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.15Down
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.10Down
Tubule5 ± 10 of 4 0.30Down
Hindgut5 ± 40 of 4 0.30Down
Heart0 ± 00 of 4 0.03Down
Fat body1 ± 00 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.21Down
Mated spermatheca3 ± 00 of 4 0.15Down
Adult carcass66 ± 73 of 4 3.30Up
Larval CNS2 ± 00 of 4 0.12Down
Larval Salivary gland3 ± 20 of 4 0.14Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.12Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea43 ± 64 of 4 2.10Up
Larval carcass5 ± 00 of 4 0.27Down
S2 cells (growing)4 ± 10 of 4 0.20Down
Whole fly20 ± 20 of 4

Looking for FBgn0033970. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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