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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033972 through 18771 annotations produced 1 hits

Ciao1 (Ciao1):

Annotation Number : CG12797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033972
Gbrowse : chr2R:10741365-10742573 (-) // 100.0 //
Probeset : 1639968_at
Accessions : protein= NP_610996;, nucleotide= NM_137152;
FlyMine data for FBgn0033972.
BDGP gene expression has embryonic in situ data for CG12797: 12 pix of staining in 7 body parts.
Homophila reports that CG12797 is a close match (1e-20) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG12797 interacts with CG7949 .
TRiP has 1 RNAi stocks for FBgn0033972 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033972 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 104 of 4 1.00None
Head248 114 of 4 1.10None
Eye268 124 of 4 1.17None
Thoracicoabdominal ganglion230 54 of 4 1.00None
Salivary gland815 234 of 4 3.57Up
Crop573 74 of 4 2.50Up
Midgut237 24 of 4 1.00None
Tubule756 314 of 4 3.30Up
Hindgut387 64 of 4 1.70Up
Heart466 244 of 4 2.04Up
Fat body354 224 of 4 1.55Up
Ovary291 34 of 4 1.30Up
Testis142 44 of 4 0.60Down
Male accessory glands658 84 of 4 2.90Up
Virgin spermatheca398 164 of 4 1.74Up
Mated spermatheca460 174 of 4 2.02Up
Adult carcass331 104 of 4 1.50Up
Larval CNS278 154 of 4 1.22Up
Larval Salivary gland522 534 of 4 2.29Up
Larval midgut220 44 of 4 0.96None
Larval tubule631 44 of 4 2.80Up
Larval hindgut367 244 of 4 1.61Up
Larval fat body321 284 of 4 1.40Up
Larval trachea476 374 of 4 2.09Up
Larval carcass317 54 of 4 1.39Up
S2 cells (growing)259 114 of 4 1.13None
Whole fly228 94 of 4

Looking for FBgn0033972. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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