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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033973 through 18771 annotations produced 1 hits



HPS (HPS1):

Annotation Number : CG12855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033973
Gbrowse : chr2R:10742946-10745005 (+) // 100.0 //
Probeset : 1627118_at
Accessions : protein= NP_610997;, nucleotide= NM_137153;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0033973.
Homophila reports that CG12855 is a close match (2e-27) to human gene HPS1 (NP_000186), a gene associated with Hermansky-Pudlak syndrome 1, 203300 (3).
VDRC has 2 RNAi stocks for FBgn0033973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain380 ± 94 of 4 7.20Up
Head153 ± 54 of 4 2.90Up
Eye181 ± 24 of 4 3.45Up
Thoracicoabdominal ganglion248 ± 134 of 4 4.70Up
Salivary gland100 ± 34 of 4 1.91Up
Crop69 ± 04 of 4 1.30Up
Midgut59 ± 14 of 4 1.10None
Tubule64 ± 14 of 4 1.20Up
Hindgut54 ± 04 of 4 1.00None
Heart72 ± 34 of 4 1.37Up
Fat body91 ± 34 of 4 1.74Up
Ovary72 ± 44 of 4 1.40Up
Testis33 ± 24 of 4 0.60Down
Male accessory glands65 ± 24 of 4 1.30None
Virgin spermatheca87 ± 24 of 4 1.66Up
Mated spermatheca76 ± 64 of 4 1.46Up
Adult carcass58 ± 34 of 4 1.10None
Larval CNS122 ± 74 of 4 2.32Up
Larval Salivary gland100 ± 54 of 4 1.90Up
Larval midgut53 ± 54 of 4 1.02None
Larval tubule91 ± 14 of 4 1.70Up
Larval hindgut54 ± 14 of 4 1.02None
Larval fat body124 ± 164 of 4 2.40Up
Larval trachea56 ± 54 of 4 1.07None
Larval carcass58 ± 44 of 4 1.12None
S2 cells (growing)44 ± 34 of 4 0.84None
Whole fly52 ± 44 of 4

Looking for FBgn0033973. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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