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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033980 through 18771 annotations produced 1 hits



Cyp6a20 (Cyp6a20):

Annotation Number : CG10245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033980
Gbrowse : chr2R:10769624-10771553 (+) // 100.0 //
Probeset : 1632021_at
Accessions : protein= NP_611002;, nucleotide= NM_137158;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033980.
BDGP gene expression has embryonic in situ data for Cyp6a20: 4 pix of staining in 1 body parts.
Homophila reports that CG10245 is a close match (7e-11) to human gene CYP2C9 (NP_000762), a gene associated with Tolbutamide poor metabolizer (3);Warfarin sensitivity, 122700 (3).
BioGrid reports that CG10245 interacts with CG3427 .
VDRC has 2 RNAi stocks for FBgn0033980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 34 of 4 1.10None
Head593 34 of 4 3.70Up
Eye616 474 of 4 3.90Up
Thoracicoabdominal ganglion350 84 of 4 2.20Up
Salivary gland161 84 of 4 1.02None
Crop524 284 of 4 3.30Up
Midgut348 134 of 4 2.20Up
Tubule433 364 of 4 2.70Up
Hindgut596 64 of 4 3.80Up
Heart536 304 of 4 3.39Up
Fat body221 684 of 4 1.40None
Ovary19 14 of 4 0.10Down
Testis24 14 of 4 0.20Down
Male accessory glands62 44 of 4 0.40Down
Virgin spermatheca174 144 of 4 1.10None
Mated spermatheca175 124 of 4 1.11None
Adult carcass823 124 of 4 5.20Up
Larval CNS21 44 of 4 0.14Down
Larval Salivary gland7 10 of 4 0.04Down
Larval midgut28 13 of 4 0.18Down
Larval tubule23 32 of 4 0.10Down
Larval hindgut62 64 of 4 0.40Down
Larval fat body6 30 of 4 0.00Down
Larval trachea13 161 of 4 0.09Down
Larval carcass16 23 of 4 0.11Down
S2 cells (growing)245 274 of 4 1.55None
Whole fly158 44 of 4

Looking for FBgn0033980. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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