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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033983 through 18771 annotations produced 1 hits



/// (CG10253 /// DmirCG10253):

Annotation Number : CG10253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033983
Gbrowse : chr2R:10817585-10820805 (-) // 100.0 //
Probeset : 1629034_at
Accessions : protein= NP_611006;, nucleotide= NM_137162;
Pathway : 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from elec
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008609 // alkylglycerone-phosphate synthase ac
FlyMine data for FBgn0033983.
BDGP gene expression has embryonic in situ data for CG10253: 18 pix of staining in 11 body parts.
Homophila reports that CG10253 is a close match (4e-15) to human gene D2HGD;D2HGDH (NP_689996), a gene associated with D-2-hydroxyglutaric aciduria, 600721 (3).
TRiP has 1 RNAi stocks for FBgn0033983 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 ± 94 of 4 5.60Up
Head101 ± 34 of 4 2.50Up
Eye76 ± 34 of 4 1.87Up
Thoracicoabdominal ganglion206 ± 84 of 4 5.00Up
Salivary gland1 ± 00 of 4 0.04Down
Crop1589 ± 534 of 438.50Up
Midgut132 ± 64 of 4 3.20Up
Tubule7 ± 10 of 4 0.20Down
Hindgut359 ± 174 of 4 8.70Up
Heart3 ± 10 of 4 0.07Down
Fat body3 ± 10 of 4 0.09Down
Ovary2 ± 00 of 4 0.10Down
Testis144 ± 64 of 4 3.50Up
Male accessory glands5 ± 00 of 4 0.10Down
Virgin spermatheca4 ± 20 of 4 0.10Down
Mated spermatheca3 ± 10 of 4 0.08Down
Adult carcass12 ± 13 of 4 0.30Down
Larval CNS165 ± 24 of 4 4.01Up
Larval Salivary gland4 ± 10 of 4 0.11Down
Larval midgut4 ± 10 of 4 0.10Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut24 ± 04 of 4 0.59Down
Larval fat body31 ± 113 of 4 0.80None
Larval trachea30 ± 44 of 4 0.74Down
Larval carcass3 ± 10 of 4 0.09Down
S2 cells (growing)2 ± 00 of 4 0.07Down
Whole fly41 ± 24 of 4

Looking for FBgn0033983. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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