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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033987 through 18771 annotations produced 1 hits



(CG12424):

Annotation Number : CG12424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033987
Gbrowse : chr2R:10850818-10868089 (+) // 100.0 //
Probeset : 1641657_s_at
Accessions : protein= NP_611009; /// NP_725433; /// NP_725434;, nucleotide= NM_137165; /// NM_166076; /// NM_166077;
FlyMine data for FBgn0033987.
BDGP gene expression has embryonic in situ data for CG12424: 15 pix of staining in 8 body parts.
BioGrid reports that CG12424 interacts with Dmel CG34380 .
VDRC has 2 RNAi stocks for FBgn0033987 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain367 ± 134 of 4 6.80Up
Head142 ± 64 of 4 2.60Up
Eye89 ± 124 of 4 1.65None
Thoracicoabdominal ganglion235 ± 54 of 4 4.40Up
Salivary gland66 ± 84 of 4 1.22None
Crop127 ± 64 of 4 2.40Up
Midgut70 ± 34 of 4 1.30None
Tubule217 ± 204 of 4 4.00Up
Hindgut186 ± 74 of 4 3.40Up
Heart29 ± 24 of 4 0.54Down
Fat body76 ± 104 of 4 1.41Up
Ovary40 ± 44 of 4 0.70None
Testis17 ± 14 of 4 0.30Down
Male accessory glands196 ± 104 of 4 3.60Up
Virgin spermatheca211 ± 284 of 4 3.90Up
Mated spermatheca256 ± 424 of 4 4.74Up
Adult carcass51 ± 24 of 4 0.90None
Larval CNS357 ± 274 of 4 6.61Up
Larval Salivary gland69 ± 54 of 4 1.28None
Larval midgut36 ± 24 of 4 0.68None
Larval tubule65 ± 34 of 4 1.20None
Larval hindgut229 ± 184 of 4 4.25Up
Larval fat body12 ± 23 of 4 0.20Down
Larval trachea216 ± 214 of 4 4.00Up
Larval carcass111 ± 144 of 4 2.07Up
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly54 ± 64 of 4

Looking for FBgn0033987. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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