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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033988 through 18771 annotations produced 1 hits



poirot (pcs):

Annotation Number : CG7761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033988
Gbrowse : chr2R:10868799-10878841 (+) // 99.77 //
Probeset : 1637004_at
Accessions : protein= NP_611010;, nucleotide= NM_137166;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from sequ
FlyMine data for FBgn0033988.
BioGrid reports that CG7761 interacts with CG9506 CG9277 CG9554 CG9986 CG8049 .
VDRC has 2 RNAi stocks for FBgn0033988 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 34 of 4 1.30Up
Head141 144 of 4 0.90None
Eye103 44 of 4 0.64Down
Thoracicoabdominal ganglion195 104 of 4 1.20None
Salivary gland343 474 of 4 2.12Up
Crop100 44 of 4 0.60Down
Midgut54 14 of 4 0.30Down
Tubule50 34 of 4 0.30Down
Hindgut104 44 of 4 0.60Down
Heart44 44 of 4 0.27Down
Fat body46 54 of 4 0.28Down
Ovary229 74 of 4 1.40Up
Testis63 34 of 4 0.40Down
Male accessory glands80 24 of 4 0.50Down
Virgin spermatheca34 24 of 4 0.21Down
Mated spermatheca49 113 of 4 0.31Down
Adult carcass95 114 of 4 0.60Down
Larval CNS114 44 of 4 0.71None
Larval Salivary gland356 194 of 4 2.20Up
Larval midgut40 13 of 4 0.25Down
Larval tubule62 14 of 4 0.40Down
Larval hindgut92 54 of 4 0.57Down
Larval fat body39 24 of 4 0.20Down
Larval trachea118 254 of 4 0.73None
Larval carcass101 174 of 4 0.63Down
S2 cells (growing)143 34 of 4 0.89None
Whole fly161 164 of 4

Looking for FBgn0033988. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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