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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033989 through 18771 annotations produced 1 hits



(CG7639):

Annotation Number : CG7639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033989
Gbrowse : chr2R:10875156-10879728 (-) // 100.0 //
Probeset : 1630893_at
Accessions : protein= NP_995838;, nucleotide= NM_206116;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred
FlyMine data for FBgn0033989.
VDRC has 3 RNAi stocks for FBgn0033989 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 ± 64 of 4 1.50Up
Head133 ± 94 of 4 0.90None
Eye130 ± 34 of 4 0.91None
Thoracicoabdominal ganglion243 ± 64 of 4 1.70Up
Salivary gland64 ± 74 of 4 0.45Down
Crop244 ± 164 of 4 1.70Up
Midgut149 ± 94 of 4 1.00None
Tubule211 ± 54 of 4 1.50Up
Hindgut371 ± 134 of 4 2.60Up
Heart124 ± 74 of 4 0.87None
Fat body101 ± 34 of 4 0.71None
Ovary275 ± 104 of 4 1.90Up
Testis251 ± 114 of 4 1.80Up
Male accessory glands207 ± 94 of 4 1.50Up
Virgin spermatheca63 ± 54 of 4 0.44Down
Mated spermatheca77 ± 14 of 4 0.54Down
Adult carcass113 ± 84 of 4 0.80None
Larval CNS145 ± 64 of 4 1.02None
Larval Salivary gland71 ± 44 of 4 0.50Down
Larval midgut117 ± 154 of 4 0.82None
Larval tubule28 ± 24 of 4 0.20Down
Larval hindgut373 ± 574 of 4 2.62Up
Larval fat body45 ± 124 of 4 0.30Down
Larval trachea84 ± 54 of 4 0.59Down
Larval carcass201 ± 364 of 4 1.42None
S2 cells (growing)106 ± 64 of 4 0.75None
Whole fly142 ± 154 of 4

Looking for FBgn0033989. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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