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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033993 through 18771 annotations produced 1 hits



(CG8089):

Annotation Number : CG8089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033993
Gbrowse : chr2R:11033385-11035260 (-) // 100.0 //
Probeset : 1631190_at
Accessions : protein= NP_611014;, nucleotide= NM_137170;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033993.
VDRC has 2 RNAi stocks for FBgn0033993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 03 of 4 0.30Down
Head9 13 of 4 0.30Down
Eye5 12 of 4 0.19Down
Thoracicoabdominal ganglion13 24 of 4 0.50Down
Salivary gland34 34 of 4 1.16None
Crop17 14 of 4 0.60Down
Midgut15 14 of 4 0.50Down
Tubule12 03 of 4 0.40Down
Hindgut27 14 of 4 0.90None
Heart10 04 of 4 0.37Down
Fat body16 34 of 4 0.56Down
Ovary70 14 of 4 2.40Up
Testis3 11 of 4 0.10Down
Male accessory glands67 44 of 4 2.30Up
Virgin spermatheca16 14 of 4 0.56Down
Mated spermatheca22 24 of 4 0.78None
Adult carcass10 21 of 4 0.40Down
Larval CNS19 24 of 4 0.65Down
Larval Salivary gland49 44 of 4 1.70Up
Larval midgut10 13 of 4 0.35Down
Larval tubule18 14 of 4 0.60Down
Larval hindgut25 04 of 4 0.85Down
Larval fat body17 24 of 4 0.60Down
Larval trachea18 24 of 4 0.63Down
Larval carcass14 04 of 4 0.50Down
S2 cells (growing)14 04 of 4 0.48Down
Whole fly29 14 of 4

Looking for FBgn0033993. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime