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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033995 through 18771 annotations produced 1 hits



/// Nedd2-like caspase (CG8090 /// Nc):

Annotation Number : CG8090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033995
Gbrowse : chr2R:11086811-11088682 (-) // 100.0 //
Probeset : 1627473_at
Accessions : protein= NP_001163158; /// NP_611016;, nucleotide= NM_001169687; /// NM_137172;
FlyMine data for FBgn0033995.
TRiP has 1 RNAi stocks for FBgn0033995 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033995 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 54 of 4 1.80Up
Head98 64 of 4 0.80None
Eye74 64 of 4 0.64Down
Thoracicoabdominal ganglion322 84 of 4 2.80Up
Salivary gland240 154 of 4 2.07Up
Crop90 44 of 4 0.80Down
Midgut107 64 of 4 0.90None
Tubule117 54 of 4 1.00None
Hindgut98 44 of 4 0.80Down
Heart114 14 of 4 0.98None
Fat body101 54 of 4 0.87Down
Ovary208 24 of 4 1.80Up
Testis92 14 of 4 0.80Down
Male accessory glands314 184 of 4 2.70Up
Virgin spermatheca143 64 of 4 1.23Up
Mated spermatheca173 74 of 4 1.49Up
Adult carcass91 44 of 4 0.80Down
Larval CNS141 64 of 4 1.21Up
Larval Salivary gland394 144 of 4 3.39Up
Larval midgut123 54 of 4 1.06None
Larval tubule226 64 of 4 2.00Up
Larval hindgut125 34 of 4 1.08None
Larval fat body171 84 of 4 1.50Up
Larval trachea121 124 of 4 1.04None
Larval carcass114 94 of 4 0.99None
S2 cells (growing)169 24 of 4 1.46Up
Whole fly116 34 of 4

Looking for FBgn0033995. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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