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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033996 through 18771 annotations produced 1 hits



(CG11807):

Annotation Number : CG11807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033996
Gbrowse : chr2R:11089028-11091971 (+) // 99.64 //
Probeset : 1628627_at
Accessions : protein= NP_611017;, nucleotide= NM_137173;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred fr
FlyMine data for FBgn0033996.
BDGP gene expression has embryonic in situ data for CG11807: 4 pix of staining in 1 body parts.
BioGrid reports that CG11807 interacts with CG8614 .
VDRC has 3 RNAi stocks for FBgn0033996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain300 ± 84 of 4 1.60Up
Head196 ± 44 of 4 1.00None
Eye100 ± 44 of 4 0.52Down
Thoracicoabdominal ganglion259 ± 54 of 4 1.30Up
Salivary gland169 ± 124 of 4 0.87None
Crop353 ± 114 of 4 1.80Up
Midgut77 ± 34 of 4 0.40Down
Tubule172 ± 24 of 4 0.90Down
Hindgut197 ± 44 of 4 1.00None
Heart161 ± 54 of 4 0.83Down
Fat body225 ± 164 of 4 1.17Up
Ovary448 ± 64 of 4 2.30Up
Testis318 ± 34 of 4 1.60Up
Male accessory glands142 ± 74 of 4 0.70Down
Virgin spermatheca122 ± 64 of 4 0.63Down
Mated spermatheca145 ± 54 of 4 0.75Down
Adult carcass169 ± 94 of 4 0.90None
Larval CNS190 ± 44 of 4 0.98None
Larval Salivary gland143 ± 84 of 4 0.74Down
Larval midgut85 ± 34 of 4 0.44Down
Larval tubule205 ± 64 of 4 1.10None
Larval hindgut195 ± 74 of 4 1.01None
Larval fat body312 ± 54 of 4 1.60Up
Larval trachea119 ± 74 of 4 0.62Down
Larval carcass221 ± 64 of 4 1.15Up
S2 cells (growing)247 ± 44 of 4 1.28Up
Whole fly193 ± 74 of 4

Looking for FBgn0033996. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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