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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033997 through 18771 annotations produced 1 hits



():

Annotation Number : CG12953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033997
Gbrowse : chr2R:11092500-11093317 (+) // 100.0 //
Probeset : 1624814_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0033997.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 12 of 4 1.10None
Head9 ± 11 of 4 1.10None
Eye3 ± 10 of 4 0.38Down
Thoracicoabdominal ganglion13 ± 40 of 4 1.60None
Salivary gland9 ± 30 of 4 1.14None
Crop8 ± 30 of 4 1.00None
Midgut11 ± 20 of 4 1.30None
Tubule5 ± 00 of 4 0.60Down
Hindgut7 ± 20 of 4 0.90None
Heart4 ± 10 of 4 0.50Down
Fat body8 ± 50 of 4 0.96None
Ovary7 ± 11 of 4 0.80None
Testis14 ± 04 of 4 1.70Up
Male accessory glands2 ± 10 of 4 0.30Down
Virgin spermatheca4 ± 10 of 4 0.56None
Mated spermatheca5 ± 20 of 4 0.58None
Adult carcass14 ± 30 of 4 1.70None
Larval CNS24 ± 34 of 4 2.80Up
Larval Salivary gland9 ± 21 of 4 1.08None
Larval midgut16 ± 13 of 4 1.87Up
Larval tubule12 ± 20 of 4 1.50None
Larval hindgut6 ± 10 of 4 0.73None
Larval fat body18 ± 13 of 4 2.20Up
Larval trachea7 ± 41 of 4 0.86None
Larval carcass9 ± 20 of 4 1.07None
S2 cells (growing)3 ± 00 of 4 0.38Down
Whole fly8 ± 10 of 4

Looking for FBgn0033997. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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