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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033999 through 18771 annotations produced 1 hits



(CG8093):

Annotation Number : CG8093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033999
Gbrowse : chr2R:11101836-11103105 (-) // 100.0 //
Probeset : 1634515_at
Accessions : protein= NP_611020;, nucleotide= NM_137176;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0033999.
Homophila reports that CG8093 is a close match (2e-61) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
BioGrid reports that CG8093 interacts with CG9665 .
VDRC has 1 RNAi stocks for FBgn0033999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut2792 ± 894 of 419.20Up
Tubule6 ± 00 of 4 0.00Down
Hindgut55 ± 54 of 4 0.40Down
Heart4 ± 10 of 4 0.03Down
Fat body10 ± 10 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands10 ± 30 of 4 0.10Down
Virgin spermatheca9 ± 10 of 4 0.07Down
Mated spermatheca5 ± 10 of 4 0.04Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut210 ± 334 of 4 1.45None
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.02Down
Larval carcass6 ± 00 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly145 ± 234 of 4

Looking for FBgn0033999. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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