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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034001 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L41 (mRpL41):

Annotation Number : CG12954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034001
Gbrowse : chr2R:11104526-11105118 (-) // 100.0 //
Probeset : 1641262_at
Accessions : protein= NP_611022;, nucleotide= NM_137178;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0034001.
BDGP gene expression has embryonic in situ data for CG12954: 4 pix of staining in 1 body parts.
BioGrid reports that CG12954 interacts with CG14962 CG5792 .
VDRC has 3 RNAi stocks for FBgn0034001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 24 of 4 1.50Up
Head224 44 of 4 1.00None
Eye236 94 of 4 1.09None
Thoracicoabdominal ganglion381 154 of 4 1.80Up
Salivary gland197 104 of 4 0.91None
Crop165 84 of 4 0.80Down
Midgut161 34 of 4 0.70Down
Tubule131 44 of 4 0.60Down
Hindgut267 44 of 4 1.20Up
Heart149 34 of 4 0.69Down
Fat body178 114 of 4 0.82Down
Ovary273 54 of 4 1.30Up
Testis82 14 of 4 0.40Down
Male accessory glands144 44 of 4 0.70Down
Virgin spermatheca159 24 of 4 0.73Down
Mated spermatheca140 74 of 4 0.65Down
Adult carcass237 194 of 4 1.10None
Larval CNS274 124 of 4 1.27Up
Larval Salivary gland193 34 of 4 0.89None
Larval midgut112 74 of 4 0.52Down
Larval tubule89 44 of 4 0.40Down
Larval hindgut209 164 of 4 0.97None
Larval fat body91 34 of 4 0.40Down
Larval trachea176 184 of 4 0.82Down
Larval carcass152 174 of 4 0.70Down
S2 cells (growing)176 54 of 4 0.81Down
Whole fly217 74 of 4

Looking for FBgn0034001. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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