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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034005 through 18771 annotations produced 1 hits



alphaPS4 (alphaPS4):

Annotation Number : CG16827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034005
Gbrowse : chr2R:11146786-11150233 (+) // 100.0 //
Probeset : 1632299_at
Accessions : protein= NP_611025;, nucleotide= NM_137181;
Pathway : 0008305 // integrin complex // inferred from sequence or structural similarity /// 0008305 // integrin complex // non-tr
Interpro : 0004872 // receptor activity // inferred from sequence or structural similarity /// 0004872 // receptor activity // infe
FlyMine data for FBgn0034005.
Homophila reports that CG16827 is a close match (7e-19) to human gene (NP_000878), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0034005 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head2 10 of 4 0.60None
Eye2 00 of 4 0.63None
Thoracicoabdominal ganglion3 20 of 4 1.00None
Salivary gland12 20 of 4 3.21Up
Crop3 10 of 4 0.90None
Midgut12 10 of 4 3.10Up
Tubule9 10 of 4 2.40Up
Hindgut3 10 of 4 0.90None
Heart3 11 of 4 0.83None
Fat body2 20 of 4 0.59None
Ovary3 00 of 4 1.00None
Testis7 02 of 4 1.80None
Male accessory glands9 20 of 4 2.50None
Virgin spermatheca3 10 of 4 0.92None
Mated spermatheca4 10 of 4 1.19None
Adult carcass4 20 of 4 1.10None
Larval CNS3 10 of 4 0.85None
Larval Salivary gland6 01 of 4 1.68None
Larval midgut3 00 of 4 0.88None
Larval tubule12 12 of 4 3.10Up
Larval hindgut5 11 of 4 1.37None
Larval fat body3 00 of 4 0.80None
Larval trachea2 10 of 4 0.60None
Larval carcass2 10 of 4 0.71None
S2 cells (growing)22 14 of 4 5.85Up
Whole fly3 10 of 4

Looking for FBgn0034005. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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