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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034007 through 18771 annotations produced 1 hits



NADH:ubiquinone oxidoreductase 51 kDa subunit (CG8102):

Annotation Number : CG8102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034007
Gbrowse : chr2R:11184268-11185834 (-) // 100.0 //
Probeset : 1627952_a_at
Accessions : protein= NP_611027; /// NP_725449;, nucleotide= NM_137183; /// NM_166086;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0034007.
Homophila reports that CG8102 is a close match (8e-124) to human gene NDUFV1;UQOR1 (NP_009034), a gene associated with Alexander disease, 203450 (3);Leigh syndrome, 256000 (3);Mitochondrial complex I deficiency, 252010 (3).
VDRC has 1 RNAi stocks for FBgn0034007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head3 ± 10 of 4 0.20Down
Eye3 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.20Down
Salivary gland8 ± 40 of 4 0.39Down
Crop6 ± 10 of 4 0.30Down
Midgut5 ± 20 of 4 0.30Down
Tubule5 ± 00 of 4 0.30Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.16Down
Fat body6 ± 10 of 4 0.31Down
Ovary2 ± 00 of 4 0.10Down
Testis279 ± 124 of 412.30Up
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca5 ± 20 of 4 0.25Down
Mated spermatheca8 ± 10 of 4 0.35Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS4 ± 11 of 4 0.19Down
Larval Salivary gland3 ± 11 of 4 0.15Down
Larval midgut6 ± 21 of 4 0.27Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.19Down
Larval fat body41 ± 193 of 4 1.80None
Larval trachea5 ± 22 of 4 0.22Down
Larval carcass5 ± 10 of 4 0.25Down
S2 cells (growing)4 ± 00 of 4 0.20Down
Whole fly22 ± 24 of 4

Looking for FBgn0034007. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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