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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034008 through 18771 annotations produced 1 hits



(CG8152):

Annotation Number : CG8152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034008
Gbrowse : chr2R:11197435-11198634 (-) // 100.0 //
Probeset : 1640101_at
Accessions : protein= NP_611028;, nucleotide= NM_137184;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0034008.
BDGP gene expression has embryonic in situ data for CG8152: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0034008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 24 of 4 0.80Down
Head45 24 of 4 0.50Down
Eye48 14 of 4 0.53Down
Thoracicoabdominal ganglion50 14 of 4 0.50Down
Salivary gland67 54 of 4 0.73Down
Crop51 14 of 4 0.60Down
Midgut39 14 of 4 0.40Down
Tubule29 24 of 4 0.30Down
Hindgut50 14 of 4 0.50Down
Heart35 34 of 4 0.38Down
Fat body34 24 of 4 0.37Down
Ovary192 44 of 4 2.10Up
Testis68 14 of 4 0.70Down
Male accessory glands35 54 of 4 0.40Down
Virgin spermatheca30 44 of 4 0.33Down
Mated spermatheca30 24 of 4 0.33Down
Adult carcass31 23 of 4 0.30Down
Larval CNS64 34 of 4 0.70Down
Larval Salivary gland38 14 of 4 0.41Down
Larval midgut29 34 of 4 0.32Down
Larval tubule28 14 of 4 0.30Down
Larval hindgut99 104 of 4 1.08None
Larval fat body31 24 of 4 0.30Down
Larval trachea45 24 of 4 0.49Down
Larval carcass34 04 of 4 0.38Down
S2 cells (growing)54 14 of 4 0.59Down
Whole fly92 44 of 4

Looking for FBgn0034008. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime