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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034009 through 18771 annotations produced 1 hits



(CG8155):

Annotation Number : CG8155
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034009
Gbrowse : chr2R:11205348-11209674 (-) // 100.0 //
Probeset : 1627431_at
Accessions : protein= NP_611029;, nucleotide= NM_137185;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0034009.
BioGrid reports that CG8155 interacts with CG8427 CG8947 .
VDRC has 3 RNAi stocks for FBgn0034009 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain269 ± 124 of 4 2.50Up
Head121 ± 44 of 4 1.10None
Eye71 ± 44 of 4 0.66Down
Thoracicoabdominal ganglion268 ± 44 of 4 2.50Up
Salivary gland52 ± 54 of 4 0.48Down
Crop99 ± 24 of 4 0.90None
Midgut65 ± 34 of 4 0.60Down
Tubule66 ± 14 of 4 0.60Down
Hindgut70 ± 14 of 4 0.70Down
Heart83 ± 44 of 4 0.77Down
Fat body185 ± 184 of 4 1.72Up
Ovary228 ± 54 of 4 2.10Up
Testis29 ± 14 of 4 0.30Down
Male accessory glands61 ± 44 of 4 0.60Down
Virgin spermatheca105 ± 144 of 4 0.98None
Mated spermatheca100 ± 104 of 4 0.93None
Adult carcass80 ± 24 of 4 0.70Down
Larval CNS323 ± 254 of 4 3.00Up
Larval Salivary gland61 ± 64 of 4 0.57Down
Larval midgut104 ± 94 of 4 0.97None
Larval tubule151 ± 94 of 4 1.40Up
Larval hindgut118 ± 54 of 4 1.10None
Larval fat body99 ± 54 of 4 0.90None
Larval trachea79 ± 94 of 4 0.74Down
Larval carcass120 ± 44 of 4 1.12None
S2 cells (growing)136 ± 54 of 4 1.26Up
Whole fly108 ± 44 of 4

Looking for FBgn0034009. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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