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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034010 through 18771 annotations produced 1 hits



(CG8157):

Annotation Number : CG8157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034010
Gbrowse : chr2R:11213337-11213888 (-) // 100.0 //
Probeset : 1638301_at
Accessions : protein= NP_611030;, nucleotide= NM_137186;
FlyMine data for FBgn0034010.
VDRC has 1 RNAi stocks for FBgn0034010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10Down
Head134 264 of 4 5.20Up
Eye14 32 of 4 0.55None
Thoracicoabdominal ganglion9 10 of 4 0.40Down
Salivary gland9 30 of 4 0.35Down
Crop7 10 of 4 0.30Down
Midgut3 10 of 4 0.10Down
Tubule4 00 of 4 0.20Down
Hindgut6 11 of 4 0.20Down
Heart10 14 of 4 0.41Down
Fat body24 53 of 4 0.95None
Ovary1 00 of 4 0.00Down
Testis3 10 of 4 0.10Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca17 14 of 4 0.67None
Mated spermatheca14 11 of 4 0.57None
Adult carcass51 24 of 4 2.00Up
Larval CNS3 00 of 4 0.13Down
Larval Salivary gland52 84 of 4 2.03Up
Larval midgut13 10 of 4 0.53None
Larval tubule20 62 of 4 0.80None
Larval hindgut53 104 of 4 2.09None
Larval fat body2283 2104 of 488.30Up
Larval trachea26 372 of 4 1.02None
Larval carcass25 24 of 4 1.00None
S2 cells (growing)67 34 of 4 2.62Up
Whole fly25 44 of 4

Looking for FBgn0034010. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime