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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034022 through 18771 annotations produced 1 hits



(CG12964):

Annotation Number : CG12964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034022
Gbrowse : chr2R:11373765-11377615 (-) // 100.0 //
Probeset : 1641509_at
Accessions : protein= NP_611040;, nucleotide= NM_137196;
FlyMine data for FBgn0034022.
VDRC has 2 RNAi stocks for FBgn0034022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 1.20None
Head2 00 of 4 0.80None
Eye1 00 of 4 0.57None
Thoracicoabdominal ganglion2 00 of 4 0.60None
Salivary gland12 20 of 4 3.72Up
Crop4 00 of 4 1.40None
Midgut7 10 of 4 2.40None
Tubule5 00 of 4 1.70Up
Hindgut2 10 of 4 0.90None
Heart1 00 of 4 0.39None
Fat body8 50 of 4 2.66None
Ovary2 10 of 4 0.70None
Testis3 00 of 4 1.00None
Male accessory glands3 10 of 4 1.10None
Virgin spermatheca5 10 of 4 1.61None
Mated spermatheca3 10 of 4 1.03None
Adult carcass6 20 of 4 1.90None
Larval CNS3 00 of 4 1.17None
Larval Salivary gland7 20 of 4 2.23None
Larval midgut12 10 of 4 3.89Up
Larval tubule2 00 of 4 0.70None
Larval hindgut5 10 of 4 1.73None
Larval fat body5 20 of 4 1.60None
Larval trachea4 50 of 4 1.50None
Larval carcass6 20 of 4 2.06None
S2 cells (growing)3 10 of 4 1.17None
Whole fly3 10 of 4

Looking for FBgn0034022. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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