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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034027 through 18771 annotations produced 1 hits



(CG8187):

Annotation Number : CG8187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034027
Gbrowse : chr2R:11427056-11428840 (-) // 100.0 //
Probeset : 1640115_at
Accessions : protein= NP_611045;, nucleotide= NM_137201;
FlyMine data for FBgn0034027.
BDGP gene expression has embryonic in situ data for CG8187: 4 pix of staining in 1 body parts.
BioGrid reports that CG8187 interacts with CG9091 .
VDRC has 1 RNAi stocks for FBgn0034027 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 34 of 4 2.10Up
Head34 ± 24 of 4 1.40Up
Eye46 ± 04 of 4 1.99Up
Thoracicoabdominal ganglion90 ± 54 of 4 3.90Up
Salivary gland59 ± 14 of 4 2.54Up
Crop27 ± 24 of 4 1.20None
Midgut19 ± 24 of 4 0.80None
Tubule46 ± 14 of 4 2.00Up
Hindgut39 ± 34 of 4 1.70Up
Heart17 ± 24 of 4 0.74None
Fat body26 ± 83 of 4 1.14None
Ovary39 ± 34 of 4 1.70Up
Testis10 ± 04 of 4 0.40Down
Male accessory glands14 ± 13 of 4 0.60Down
Virgin spermatheca25 ± 24 of 4 1.08None
Mated spermatheca21 ± 24 of 4 0.92None
Adult carcass40 ± 54 of 4 1.70None
Larval CNS47 ± 44 of 4 2.00Up
Larval Salivary gland24 ± 04 of 4 1.02None
Larval midgut16 ± 14 of 4 0.70None
Larval tubule36 ± 24 of 4 1.60Up
Larval hindgut23 ± 14 of 4 1.00None
Larval fat body22 ± 14 of 4 0.90None
Larval trachea18 ± 14 of 4 0.78None
Larval carcass24 ± 24 of 4 1.04None
S2 cells (growing)17 ± 14 of 4 0.73None
Whole fly23 ± 24 of 4

Looking for FBgn0034027. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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