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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034031 through 18771 annotations produced 1 hits



(CG12963):

Annotation Number : CG12963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034031
Gbrowse : chr2R:11444088-11449941 (+) // 100.0 //
Probeset : 1629089_a_at
Accessions : protein= NP_001097329; /// NP_001097330; /// NP_001163159; /// NP_611048; /// NP_725475;, nucleotide= NM_001103859; /// NM_001103860; /// NM_001169688; /// NM_137204; /// NM_166101;
FlyMine data for FBgn0034031.
BDGP gene expression has embryonic in situ data for CG12963: 4 pix of staining in 1 body parts.
BioGrid reports that CG12963 interacts with CG3954 .
VDRC has 1 RNAi stocks for FBgn0034031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye5 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland12 ± 40 of 4 0.07Down
Crop17 ± 04 of 4 0.10Down
Midgut1754 ± 114 of 410.50Up
Tubule1125 ± 1674 of 4 6.70Up
Hindgut413 ± 104 of 4 2.50Up
Heart1 ± 00 of 4 0.01Down
Fat body10 ± 51 of 4 0.06Down
Ovary4 ± 10 of 4 0.00Down
Testis389 ± 74 of 4 2.30Up
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca7 ± 10 of 4 0.05Down
Mated spermatheca6 ± 22 of 4 0.04Down
Adult carcass5 ± 10 of 4 0.00Down
Larval CNS4 ± 20 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut1497 ± 784 of 4 8.93Up
Larval tubule354 ± 104 of 4 2.10Up
Larval hindgut304 ± 134 of 4 1.82Up
Larval fat body28 ± 162 of 4 0.20Down
Larval trachea9 ± 11 of 4 0.05Down
Larval carcass3 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 10 of 4 0.02Down
Whole fly167 ± 154 of 4

Looking for FBgn0034031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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