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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034032 through 18771 annotations produced 1 hits


Annotation Number : CG8195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034032
Gbrowse : chr2R:11450198-11453291 (-) // 100.0 //
Probeset : 1638782_at
Accessions : protein= NP_611049;, nucleotide= NM_137205;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0034032.
BDGP gene expression has embryonic in situ data for CG8195: 17 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0034032 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain420 134 of 4 3.20Up
Head200 104 of 4 1.50Up
Eye152 74 of 4 1.15None
Thoracicoabdominal ganglion487 34 of 4 3.70Up
Salivary gland332 94 of 4 2.50Up
Crop177 74 of 4 1.30Up
Midgut96 74 of 4 0.70Down
Tubule167 84 of 4 1.30Up
Hindgut128 64 of 4 1.00None
Heart126 74 of 4 0.95None
Fat body85 124 of 4 0.64Down
Ovary295 124 of 4 2.20Up
Testis102 44 of 4 0.80Down
Male accessory glands123 74 of 4 0.90None
Virgin spermatheca197 74 of 4 1.48Up
Mated spermatheca185 34 of 4 1.40Up
Adult carcass74 34 of 4 0.60Down
Larval CNS220 54 of 4 1.66Up
Larval Salivary gland106 64 of 4 0.80Down
Larval midgut201 304 of 4 1.51None
Larval tubule420 284 of 4 3.20Up
Larval hindgut123 134 of 4 0.92None
Larval fat body322 234 of 4 2.40Up
Larval trachea82 84 of 4 0.62Down
Larval carcass93 44 of 4 0.70Down
S2 cells (growing)100 24 of 4 0.76Down
Whole fly133 44 of 4

Looking for FBgn0034032. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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