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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034047 through 18771 annotations produced 1 hits


Annotation Number : CG12970
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034047
Gbrowse : chr2R:11743465-11745027 (+) // 100.0 //
Probeset : 1633267_a_at
Accessions : protein= NP_611062; /// NP_788360;, nucleotide= NM_137218; /// NM_176180;
FlyMine data for FBgn0034047.
VDRC has 1 RNAi stocks for FBgn0034047 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head0 00 of 4 0.30None
Eye2 00 of 4 0.78None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland4 20 of 4 1.44None
Crop1 10 of 4 0.60None
Midgut29 52 of 410.10Up
Tubule1 00 of 4 0.50None
Hindgut7 30 of 4 2.70None
Heart2 10 of 4 0.91None
Fat body8 50 of 4 2.80None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.50None
Male accessory glands5 20 of 4 1.70None
Virgin spermatheca3 10 of 4 1.02None
Mated spermatheca4 10 of 4 1.56None
Adult carcass1 00 of 4 0.60None
Larval CNS1 10 of 4 0.46None
Larval Salivary gland6 30 of 4 2.11None
Larval midgut2 10 of 4 0.69None
Larval tubule1 00 of 4 0.60None
Larval hindgut1 00 of 4 0.52None
Larval fat body1 00 of 4 0.40None
Larval trachea3 10 of 4 1.14None
Larval carcass1 00 of 4 0.49None
S2 cells (growing)19 10 of 4 6.61Up
Whole fly2 10 of 4

Looking for FBgn0034047. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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